Rifat's Publications

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     1.     Perani,M. Antonson,P. Hamoudi R.A., Ingram,C.J. Cooper,C.S. Garrett,M.D. and Goodwin,G.H. The proto-oncoprotein SYT interacts with SIP/CoAA a human nuclear receptor co-activator with similarity to EWS and TLS/FUS family of proteins. Journal of Biological Chemistry (2005) Oct 15. Click here to view full article in pdf

     2.     Mao,X., Hamoudi R.A., Zhao,P. and Baudis,M. Genetic losses in breast cancer: toward an integrated molecular cytogenetic map. Cancer Genetics Cytogenetics (2005) 160:141-151. Click here to view full article in pdf

     3.     ELhamidi,A., Hamoudi R.A. and Du M.Q. Identification of novel prognostic markers in cervical intraepithelial neoplasia using LDMAS (LOH Data Management and Analysis Software). BMC Bioinformatics (2005) 94:671-679. Click here to view full article in pdf

     4. Ye,H. Gong,L. Liu,H. Hamoudi R.A., Shirali,S. Ho,L. Chott,A. Streubel,B. Siebert,R. Gesk,S. Martin-Subero,J.I. Radford,J.A. Banerjee,S. Nicholson,A.G. Ranaldi,R. Remstein,E.D. Gao,Z. Zheng,J. Isaacson,P.G. Dogan,A. Du,M.Q. MALT lymphoma with t(14;18)(q32;q21)/IGH-MALT1 is characterized by strong cytoplasmic MALT1 and BCL10 expression. Journal of Pathology (2004) 94:671-679. Click here to view full article in pdf

     5.     ELhamidi,A., Hamoudi R.A., Kocjan G. and Du M.Q. Cervical intraepithelial neoplasia: prognosis by combined LOH analysis of multiple loci. Gynecological Oncology (2004) 94:671-679. Click here to view full article in pdf

     6.     Hamoudi,R.A., Diss T.C., Oksenhendler E., Pan L., Carbone A., Ascoli V., Boshoff C., Isaacson P. and Du M.Q. Distinct cellular origins of primary effusion lymphoma with and without EBV infection. Leukemia Research (2004) 28:333-338. Click here to view full article in pdf

     7.    Kadouri,L., Kote-Jarai Z., Easton D.F., Hubert A., Hamoudi R.A., Glaser B., Abeliovich D., Peretz T. and Eeles R.A. Polyglutamine repeat length in the AIB1 gene modifies breast cancer susceptibility in BRCA1 carriers. International Journal of Cancer (2004) 20;108:399-403. Click here to view full article in pdf

     8.    Liu,H., Hamoudi R.A., Ye H., Ruskone-Fourmestraux A., Dogan A., Isaacson P.G. and Du M.Q. t(11;18)(q21;q21) of mucosa-associated lymphoid tissue lymphoma results from illegitimate non-homologous end joining following double strand breaks. British Journal of Haematology (2004) 125:318-329. Click here to view full article in pdf

     9.     Obermann,E.C., Diss T.C., Hamoudi R.A., Munson P., Wilkins B.S., Camozzi M.L., Isaacson P.G., Du M.Q. and Dogan A. Loss of heterozygosity at chromosome 9p21 is a frequent finding in enteropathy-type T-cell lymphoma. Journal of Pathology (2004) 202:252-262. Click here to view full article in pdf

     10.     Sieben,N.L., Macropoulos P., Roemen G.M., Kolkman-Uljee S.M., Jan F.G., Hamoudi R.A., Diss T., Warren B., Al Adnani M., De Goeij A.P., Krausz T. and Flanagan A.M. In ovarian neoplasms, BRAF, but not KRAS, mutations are restricted to low-grade serous tumours. Journal of Pathology (2004) 202:336-340. Click here to view full article in pdf

     11.     Thornton,P.D., Gruszka-Westwood A.M., Hamoudi R.A., Atkinson S., Kaczmarek P., Morilla R.M., Hilditch B.L., A'Hern R., Matutes E. and Catovsky D. Characterisation of TP53 abnormalities in chronic lymphocytic leukaemia. Hematology Journal (2004) 5:47-54. Click here to view full article in pdf

     12.     Chuang,S.S., Lee C., Hamoudi R.A., Liu H., Lee P.S., Ye H., Diss T.C., Dogan A., Isaacson P.G. and Du M.Q. High frequency of t(11;18) in gastric mucosa-associated lymphoid tissue lymphomas in Taiwan, including one patient with high-grade transformation. British Journal of Haematology (2003) 120:97-100. Click here to view full article in pdf

     13.     Edwards,S.M., Kote-Jarai Z., Meitz J., Hamoudi R.A., Hope Q., Osin P., Jackson R., Southgate C., Singh R., Falconer A., Dearnaley D.P., Ardern-Jones A., Murkin A., Dowe A., Kelly J., Williams S., Oram R., Stevens M., Teare D.M., Ponder B.A., Gayther S.A., Easton D.F. and Eeles R.A. Two percent of men with early-onset prostate cancer harbor germline mutations in the BRCA2 gene. American Journal of Human Genetics (2003) 72:1-12. Click here to view full article in pdf

   14.     Elnenaei,M.O., Hamoudi R.A., Swansbury J., Gruszka-Westwood A.M., Brito-Babapulle V., Matutes E. and Catovsky D. Delineation of the minimal region of loss at 13q14 in multiple myeloma. Genes Chromosomes Cancer (2003) 36:99-106. Click here to view full article in pdf

   15.    Gruszka-Westwood,A.M., Hamoudi R.A., Osborne L., Matutes E. and Catovsky D. Deletion mapping on the long arm of chromosome 7 in splenic lymphoma with villous lymphocytes. Genes Chromosomes Cancer (2003) 36:57-69. Click here to view full article in pdf

   16.    Du,M.Q., Diss T.C., Liu H., Ye H., Hamoudi R.A., Cabecadas J., Dong H.Y., Harris N.L., Chan J.K., Rees J.W., Dogan A. and Isaacson P.G. KSHV- and EBV-associated germinotropic lymphoproliferative disorder. Blood (2002) 100:3415-3418. Click here to view full article in pdf

   17.    Gruszka-Westwood,A.M., Atkinson S., Summersgill B.M., Shipley J., Elnenaei M.O., Jain P., Hamoudi R.A., Kaeda J.S., Wotherspoon A.C., Matutes E. and Catovsky D. Unusual case of leukemic mantle cell lymphoma with amplified CCND1/IGH fusion gene. Genes Chromosomes Cancer (2002) 33:206-212. Click here to view full article in pdf

   18.     Hamidi,A.E., Liu H., Zhang Y., Hamoudi R.A., Kocjan G. and Du M.Q. Archival cervical smears: a versatile resource for molecular investigations. Cytopathology (2002) 13:291-299. Click here to view full article in pdf

   19.     Hamoudi,R.A., Johnston S., Hutchinson G. and D'Errico J. High Throughput Methods for Gene Identification, Cloning and Functional Genomics Using the GeneTAC G3 Robotics Workstation. Journal of the Association for Laboratory Automation (2002) 7:53-59. Click here to view full article in pdf

   20.     Hamoudi,R.A. NetBookingLIMS : automation of  workflow  within core genetics laboratories using novel Internet-based information management system. Journal of the Association for Laboratory Automation (2002) 6:57-59. Click here to view full article in pdf

   21.    Kote-Jarai,Z., Durocher F., Edwards S.M., Hamoudi R.A., Jackson R.A., Ardern-Jones A., Murkin A., Dearnaley D.P., Kirby R., Houlston R., Easton D.F. and Eeles R. Association between the GCG polymorphism of the selenium dependent GPX1 gene and the risk of young onset prostate cancer. Prostate Cancer Prostatic Disease (2002) 5:189-192. Click here to view full article in pdf

   22.    Liu,H., Ye H., Ruskone-Fourmestraux A., De Jong D., Pileri S., Thiede C., Lavergne A., Boot H., Caletti G., Wundisch T., Molina T., Taal B.G., Elena S., Thomas T., Zinzani P.L., Neubauer A., Stolte M., Hamoudi R.A., Dogan A., Isaacson P.G. and Du M.Q. T(11;18) is a marker for all stage gastric MALT lymphomas that will not respond to H. pylori eradication. Gastroenterology (2002) 122:1286-1294. Click here to view full article in pdf

   23.     Oksenhendler,E., Boulanger E., Galicier L., Du M.Q., Dupin N., Diss T.C., Hamoudi R.A., Daniel M.T., Agbalika F., Boshoff C., Clauvel J.P., Isaacson P.G. and Meignin V. High incidence of Kaposi sarcoma-associated herpesvirus-related non-Hodgkin lymphoma in patients with HIV infection and multicentric Castleman disease. Blood (2002) 99:2331-2336. Click here to view full article in pdf

   24.    Du,M.Q., Liu H., Diss T.C., Ye H., Hamoudi R.A., Dupin N., Meignin V., Oksenhendler E., Boshoff C. and Isaacson P.G. Kaposi sarcoma-associated herpesvirus infects monotypic (IgM lambda) but polyclonal naive B cells in Castleman disease and associated lymphoproliferative disorders. Blood (2001) 97:2130-2136. Click here to view full article in pdf

   25.    Gruszka-Westwood,A.M., Hamoudi R.A., Matutes E., Tuset E. and Catovsky D. p53 abnormalities in splenic lymphoma with villous lymphocytes. Blood (2001) 97:3552-3558. Click here to view full article in pdf

   26.     Hamoudi,R.A., Edwards S.M., Kote-Jarai Z. and Eeles R.A. An improved high throughput heteroduplex mutation detection system for screening BRCA2 mutations-fluorescent mutation detection (F-MD). Human Mutation (2001) 17:220-232. Click here to view full article in pdf

   27.    Jefferies,S., Edwards S.M., Hamoudi R.A., A'Hern R., Foulkes W., Goldgar D. and Eeles R. No germline mutations in CDKN2A (p16) in patients with squamous cell cancer of the head and neck and second primary tumours. British Journal of Cancer (2001) 85:1383-1386. Click here to view full article in pdf

   28.    Liu,H., Ye H., Dogan A., Ranaldi R., Hamoudi R.A., Bearzi I., Isaacson P.G. and Du M.Q. T(11;18)(q21;q21) is associated with advanced mucosa-associated lymphoid tissue lymphoma that expresses nuclear BCL10. Blood (2001) 98:1182-1187. Click here to view full article in pdf

   29.    Liu,H., Ruskon-Fourmestraux A., Lavergne-Slove A., Ye H., Molina T., Bouhnik Y., Hamoudi R.A., Diss T.C., Dogan A., Megraud F., Rambaud J.C., Du M.Q. and Isaacson P.G. Resistance of t(11;18) positive gastric mucosa-associated lymphoid tissue lymphoma to Helicobacter pylori eradication therapy. Lancet (2001) 357:39-40. Click here to view full article in pdf

   30.     Bradshaw,P.S., Houlston R.S., Hamoudi R.A. and Yuille M.R. A proposed BAT-26 germline polymorphism. American Journal of Pathology (2000) 156:733-734. Click here to view full article in pdf

   31.    Brito-Babapulle,V., Hamoudi R.A., Matutes E., Watson S., Kaczmarek P., Maljaie H. and Catovsky D. p53 allele deletion and protein accumulation occurs in the absence of p53 gene mutation in T-prolymphocytic leukaemia and Sezary syndrome. British Journal of Haematology (2000) 110:180-187. Click here to view full article in pdf

   32.     Callanan,M.B., Le Baccon P., Mossuz P., Duley S., Bastard C., Hamoudi R.A., Dyer M.J., Klobeck G., Rimokh R., Sotto J.J. and Leroux D. The IgG Fc receptor, FcgammaRIIB, is a target for deregulation by chromosomal translocation in malignant lymphoma. Proceedings of National Academy of Science U S A (2000) 97:309-314. Click here to view full article in pdf

   33.    Du,M.Q., Peng H., Liu H., Hamoudi R.A., Diss T.C., Willis T.G., Ye H., Dogan A., Wotherspoon A.C., Dyer M.J. and Isaacson P.G. BCL10 gene mutation in lymphoma. Blood (2000) 95:3885-3890. Click here to view full article in pdf

   34.     Forrest,M.S., Edwards S.M., Hamoudi R.A., Dearnaley D.P., Arden-Jones A., Dowe A., Murkin A., Kelly J., Teare M.D., Easton D.F., Knowles M.A., Bishop D.T. and Eeles R.A. No evidence of germline PTEN mutations in familial prostate cancer. Journal of Medical Genetics (2000) 37:210-212. Click here to view full article in pdf

   35.     Hamoudi,R.A. Automating the construction and maintenance of PAC & cDNA libraries. International Biotechnology Journal (2000) 18:12. Click here to view full article in pdf

   36.    Liu,H., Peng H., Hamoudi R.A., Mullins P.D., Ranaldi R., Bearzi I., Isaacson P.G. and Du M.Q. A "G insertion" at nucleic acids 481 of the H. pylori fldA gene is not associated with gastric MALT lymphoma. Gastroenterology (2000) 118:988-989. Click here to view full article in pdf

   37.    Mao,X. and Hamoudi R.A. Molecular and cytogenetic analysis of glioblastoma multiforme. Cancer Genetics Cytogenetics (2000) 122:87-92. Click here to view full article in pdf

   38.    Mao,X., McGuire S. and Hamoudi R.A. Molecular and cytogenetic analysis of lymphoblastoid and colon cancer cell lines from cotton-top tamarin (Sagiunus oedipus). Cancer Genetics Cytogenetics (2000) 120:6-10. Click here to view full article in pdf

   39.     Rapley,E.A., Crockford G.P., Teare D., Biggs P., Seal S., Barfoot R., Edwards S., Hamoudi R.A., Heimdal K., Fossa S.D., Tucker K., Donald J., Collins F., Friedlander M., Hogg D., Goss P., Heidenreich A., Ormiston W., Daly P.A., Forman D., Oliver T.D., Leahy M., Huddart R., Cooper C.S., Bodmer J.G. and . Localization to Xq27 of a susceptibility gene for testicular germ-cell tumours. Nature Genetics (2000) 24:197-200. Click here to view full article in pdf

   40. Bradshaw,P.S., Hamoudi R.A., Min T., Catovsky D., Houlston R.S. and Yuille M.R. Fluorescent BAT-25 and BAT-26 analysis of T cell prolymphocytic leukaemia. Leukemia (1999) 13:2104-2106. Click here to view full article in pdf

   41.     Edwards,S.M., Badzioch M.D., Minter R., Hamoudi R.A., Collins N., Ardern-Jones A., Dowe A., Osborne S., Kelly J., Shearer R., Easton D.F., Saunders G.F., Dearnaley D.P. and Eeles R.A. Androgen receptor polymorphisms: association with prostate cancer risk, relapse and overall survival. International Journal of Cancer (1999) 84:458-465. Click here to view full article in pdf

   42.    Mao,X., Barfoot R., Hamoudi R.A., Easton D.F., Flanagan A.M. and Stratton M.R. Allelotype of uterine leiomyomas. Cancer Genetics Cytogenetics (1999) 114:89-95. Click here to view full article in pdf

   43.     Smedley,D., Hamoudi R.A., Lu Y.J., Cooper C. and Shipley J. Cloning and mapping of members of the MYM family. Genomics (1999) 60:244-247. Click here to view full article in pdf

   44.     Tomlinson,I., Rahman N., Frayling I., Mangion J., Barfoot R., Hamoudi R.A., Seal S., Northover J., Thomas H.J., Neale K., Hodgson S., Talbot I., Houlston R. and Stratton M.R. Inherited susceptibility to colorectal adenomas and carcinomas: evidence for a new predisposition gene on 15q14-q22. Gastroenterology (1999) 116:789-795. Click here to view full article in pdf

   45.    Willis,T.G., Jadayel D.M., Du M.Q., Peng H., Perry A.R., Abdul-Rauf M., Price H., Karran L., Majekodunmi O., Wlodarska I., Pan L., Crook T., Hamoudi R.A., Isaacson P.G. and Dyer M.J. Bcl10 is involved in t(1;14)(p22;q32) of MALT B cell lymphoma and mutated in multiple tumor types. Cell (1999) 96:35-45. Click here to view full article in pdf

   46.    Eeles,R.A., Durocher F., Edwards S., Teare D., Badzioch M., Hamoudi R.A., Gill S., Biggs P., Dearnaley D., Ardern-Jones A., Dowe A., Shearer R., McLennan D.L., Norman R.L., Ghadirian P., Aprikian A., Ford D., Amos C., King T.M., Labrie F., Simard J., Narod S.A., Easton D. and Foulkes W.D. Linkage analysis of chromosome 1q markers in 136 prostate cancer families. The Cancer Research Campaign/British Prostate Group U.K. Familial Prostate Cancer Study Collaborators. American Journal of Human Genetics (1998) 62:653-658. Click here to view full article in pdf

   47.    Mao,X., Barfoot R., Hamoudi R.A. and Noble M. Alleletyping of an oligodendrocyte-type-2 astrocyte lineage derive from a human glioblastoma multiforme. Journal of Neurooncology (1998) 40:243-250. Click here to view full article in pdf

   48.     Smedley,D., Hamoudi R.A., Clark J., Warren W., Abdul-Rauf M., Somers G., Venter D., Fagan K., Cooper C. and Shipley J. The t(8;13)(p11;q11-12) rearrangement associated with an atypical myeloproliferative disorder fuses the fibroblast growth factor receptor 1 gene to a novel gene RAMP. Human Molecular Genetics (1998) 7:637-642. Click here to view full article in pdf

   49.     Bignell,G.R., Canzian F., Shayeghi M., Stark M., Shugart Y.Y., Biggs P., Mangion J., Hamoudi R.A., Rosenblatt J., Buu P., Sun S., Stoffer S.S., Goldgar D.E., Romeo G., Houlston R.S., Narod S.A., Stratton M.R. and Foulkes W.D. Familial nontoxic multinodular thyroid goiter locus maps to chromosome 14q but does not account for familial nonmedullary thyroid cancer. American Journal of Human Genetics (1997) 61:1123-1130. Click here to view full article in pdf

   50.    Clark,J., Lu Y.J., Sidhar S.K., Parker C., Gill S., Smedley D., Hamoudi R.A., Linehan W.M., Shipley J. and Cooper C.S. Fusion of splicing factor genes PSF and NonO (p54nrb) to the TFE3 gene in papillary renal cell carcinoma. Oncogene (1997) 15:2233-2239. Click here to view full article in pdf

   51.     Edwards,S.M., Dearnaley D.P., Ardern-Jones A., Hamoudi R.A., Easton D.F., Ford D., Shearer R., Dowe A. and Eeles R.A. No germline mutations in the dimerization domain of MXI1 in prostate cancer clusters. The CRC/BPG UK Familial Prostate Cancer Study Collaborators. Cancer Research Campaign/British Prostate Group. Br J Cancer (1997) 76:992-1000. Click here to view full article in pdf

   52.    Lens,D., De Schouwer P.J., Hamoudi R.A., Abdul-Rauf M., Farahat N., Matutes E., Crook T., Dyer M.J. and Catovsky D. p53 abnormalities in B-cell prolymphocytic leukemia. Blood (1997) 89:2015-2023. Click here to view full article in pdf

   53.    Lens,D., Dyer M.J., Garcia-Marco J.M., De Schouwer P.J., Hamoudi R.A., Jones D., Farahat N., Matutes E. and Catovsky D. p53 abnormalities in CLL are associated with excess of prolymphocytes and poor prognosis. British Journal of Haematology (1997) 99:848-857. Click here to view full article in pdf

   54.     Lakhani,S.R., Slack D.N., Hamoudi R.A., Collins N., Stratton M.R. and Sloane J.P. Detection of allelic imbalance indicates that a proportion of mammary hyperplasia of usual type are clonal, neoplastic proliferations. Journal of Laboratory Investigation (1996) 74:129-135. Click here to view full article in pdf

   55.     Lancaster,J.M., Wooster R., Mangion J., Phelan C.M., Cochran C., Gumbs C., Seal S., Barfoot R., Collins N., Bignell G., Patel S., Hamoudi R.A., Larsson C., Wiseman R.W., Berchuck A., Iglehart J.D., Marks J.R., Ashworth A., Stratton M.R. and Futreal P.A. BRCA2 mutations in primary breast and ovarian cancers. Nature Genetics (1996) 13:238-240. Click here to view full article in pdf

   56.     Sidhar,S.K., Clark J., Gill S., Hamoudi R.A., Crew A.J., Gwilliam R., Ross M., Linehan W.M., Birdsall S., Shipley J. and Cooper C.S. The t(X;1)(p11.2;q21.2) translocation in papillary renal cell carcinoma fuses a novel gene PRCC to the TFE3 transcription factor gene. Human Molecular Genetics (1996) 5:1333-1338. Click here to view full article in pdf

   57.     Gayther,S.A., Warren W., Mazoyer S., Russell P.A., Harrington P.A., Chiano M., Seal S., Hamoudi R.A., van Rensburg E.J., Dunning A.M. and . Germline mutations of the BRCA1 gene in breast and ovarian cancer families provide evidence for a genotype-phenotype correlation. Nature Genetics (1995) 11:428-433. Click here to view full article in pdf

   58.     Wooster,R., Bignell G., Lancaster J., Swift S., Seal S., Mangion J., Collins N., Gregory S., Gumbs C., Micklem G., Barfoot R., Hamoudi R.A., Patel S., Rice C., Biggs P., Hashim Y., Smith A., Connor F., Arason A., Gudmundsson J., Ficenec D., Kelsell D., Ford D., Tonin P., Bishop T.D., Spurr N.K., Ponder B.A.J., Eeles R., Peto J., Devilee P., Cornelisse C., Lynch H., Narod S., Lenoir G., Egilsson V., Barkadottir R.B., Easton D.F., Bentley D.R., Futreal P.A., Ashworth A. and Stratton M.R. Identification of the breast cancer susceptibility gene BRCA2. Nature (1995) 378:789-792. Click here to view full article in pdf